Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs28420551 chr7:29685353 G/A 5.34E-13 118 38.58 45.87 6 KM Plot
THYM rs28420833 chr4:6279504 G/A 3.14E-6 115 27.13 38.83 50.3 KM Plot
THYM rs28428903 chr3:118941387 C/G 5.55E-13 119 46.27 30.13 3.83 KM Plot
THYM rs2842980 chr6:160100116 A/T 0.000118 119 23.43 35.13 46.43 KM Plot
THYM rs28431958 chr18:33578401 T/G 0.000228 118 49.4 35 51.23 KM Plot
THYM rs28451210 chr7:29687582 T/C 5.34E-13 118 38.58 45.87 6 KM Plot
THYM rs28457783 chr7:29687058 T/G 4.22E-13 119 38.23 46.07 6 KM Plot
THYM rs28459299 chr9:97249539 T/C 7.08E-5 119 39.75 45.87 17.03 KM Plot
THYM rs28477240 chr9:97244557 G/A 7.08E-5 119 39.75 45.87 17.03 KM Plot
THYM rs28477387 chr7:29728504 G/T 3.51E-13 119 38.13 46.27 6 KM Plot
THYM rs28480606 chr15:78762313 A/G 3.34E-5 119 42.82 42.47 26 KM Plot
THYM rs28511883 chr15:78783683 C/T 3.52E-5 118 42.82 46.6 26 KM Plot
THYM rs28516764 chr7:29685245 T/G 5.34E-13 118 38.58 45.87 6 KM Plot
THYM rs28531949 chr4:9612273 A/G 9.25E-9 117 40.67 42.9 12.63 KM Plot
THYM rs28538173 chr2:30778584 C/T 3.25E-7 119 38.33 46.6 13.23 KM Plot